PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01277.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 218aa    MW: 24559.2 Da    PI: 5.375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01277.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-071750134
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                             rg+W+ eE e+l+  + + G ++W++ +r  g++
  Rsa1.0_01277.1_g00008.1 17 RGAWSDEESEILKAFILKNGHRNWRSLPRLAGLK 50
                             89****************************9944 PP

2Myb_DNA-binding44.53.5e-145195148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg++T++E++ ++++ + lG++ W++Ia+++g  Rt++++k+ w+++l
  Rsa1.0_01277.1_g00008.1 51 RGNFTKDEEDTIIHLTQTLGNK-WSKIASHLG--RTDNEIKNVWNTHL 95
                             89********************.********8..***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0051245IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-71547IPR009057Homeodomain-like
SuperFamilySSF466894.28E-141691IPR009057Homeodomain-like
PROSITE profilePS5129419.4034699IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-204899IPR009057Homeodomain-like
SMARTSM007172.1E-125097IPR001005SANT/Myb domain
PfamPF002499.7E-135195IPR001005SANT/Myb domain
CDDcd001673.08E-75395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGKGKAPCYD HSQVLKRGAW SDEESEILKA FILKNGHRNW RSLPRLAGLK RGNFTKDEED  60
TIIHLTQTLG NKWSKIASHL GRTDNEIKNV WNTHLKKRLM KSNSSASSDV TSQASSVSHS  120
SSPASSSASN DVIKSEKINE EEDLEEILVE DMACGFEVNA PQSLESLFED RKIPPPISKP  180
DSVEIHEKSD HGELCSRMVE PGLDDYNEWL NYFDNQNF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00352DAPTransfer from AT3G12820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593773.11e-122PREDICTED: myb-related protein Myb4-like
TrEMBLA0A078GHY61e-123A0A078GHY6_BRANA; BnaC01g38230D protein
STRINGBra039344.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140961624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12820.12e-78myb domain protein 10